{"id":816,"date":"2025-03-09T13:16:29","date_gmt":"2025-03-09T13:16:29","guid":{"rendered":"https:\/\/www.ecstatic-kepler.202-230-235-121.plesk.page\/?page_id=816"},"modified":"2025-03-09T13:16:29","modified_gmt":"2025-03-09T13:16:29","slug":"undergrad-students","status":"publish","type":"page","link":"https:\/\/www.okada-lab.phys.s.u-tokyo.ac.jp\/index.php\/en\/undergrad-students\/","title":{"rendered":"Undergrad Students"},"content":{"rendered":"<h3>Former Undergraduate Students (University of Tokyo &#8211; Special Experiments)<\/h3>\n<table>\n<tbody>\n<tr>\n<th>Name<\/th>\n<th>Academic Year<\/th>\n<th>Research Topic<\/th>\n<\/tr>\n<tr>\n<td>Kota Tokiwa<\/td>\n<td>2024 Special Experiment II<\/td>\n<td>Estimation of entropy production in cell dynamics<\/td>\n<\/tr>\n<tr>\n<td>Haruo Saito<\/td>\n<td>2024 Special Experiment II<\/td>\n<td>Estimation of entropy production using thermodynamic uncertainty relation<\/td>\n<\/tr>\n<tr>\n<td>Hiroya Ezaki<\/td>\n<td>2024 Special Experiment I<\/td>\n<td>Development of iSCAT microscope and total internal reflection dark-field microscope<\/td>\n<\/tr>\n<tr>\n<td>Eisuke Takikawa<\/td>\n<td>2024 Special Experiment I<\/td>\n<td>Estimation of TUR efficiency by single-molecule measurement<\/td>\n<\/tr>\n<tr>\n<td>Kaito Watanabe<\/td>\n<td>2023 Special Experiment II<\/td>\n<td>Information thermodynamics of chemical reaction networks<\/td>\n<\/tr>\n<tr>\n<td>Yoshinori Hara<\/td>\n<td>2023 Special Experiment II<\/td>\n<td>Fisher-Rao metric and optimal transport theory<\/td>\n<\/tr>\n<tr>\n<td>Takumi Furuya<\/td>\n<td>2023 Special Experiment I<\/td>\n<td>Development of total internal reflection fluorescence confocal microscope<\/td>\n<\/tr>\n<tr>\n<td>Saaya Hirashima<\/td>\n<td>2023 Special Experiment I<\/td>\n<td>Genetic manipulation of transparent zebrafish (Danionella)<\/td>\n<\/tr>\n<tr>\n<td>Jun Chiba<\/td>\n<td>2022 Special Experiment II<\/td>\n<td>Automation of microinjection experiments into cultured cells<\/td>\n<\/tr>\n<tr>\n<td>Kaito Takanami<\/td>\n<td>2022 Special Experiment II<\/td>\n<td>Parameter estimation of anisotropic diffusion (<a href=\"https:\/\/doi.org\/10.1103\/PhysRevResearch.6.033272?_gl=1*1yg1ryb*_ga*MTY5MDUzNzI2My4xNzQxNTExNjQx*_ga_ZS5V2B2DR1*MTc0MTUxMTY0MS4xLjEuMTc0MTUxMTY5OS4wLjAuMTc1NDkwMDM3MA..\">PRR 2024<\/a>)<\/td>\n<\/tr>\n<tr>\n<td>Ayano Oda<\/td>\n<td>2022 Special Experiment I<\/td>\n<td>Application of optimal transport theory to biological phenomena<\/td>\n<\/tr>\n<tr>\n<td>Kotaro Ogawa<\/td>\n<td>2022 Special Experiment I<\/td>\n<td>Development of speckle structured illumination total internal reflection microscope<\/td>\n<\/tr>\n<tr>\n<td>Shinichi Arita<\/td>\n<td>2021 Special Experiment II<\/td>\n<td>Development of ghost imaging microscope<\/td>\n<\/tr>\n<tr>\n<td>Hiroki Horie<\/td>\n<td>2021 Special Experiment II<\/td>\n<td>Development of ghost imaging microscope<\/td>\n<\/tr>\n<tr>\n<td>Sora Hirokane<\/td>\n<td>2021 Special Experiment I<\/td>\n<td>Intracellular diffusion measurement<\/td>\n<\/tr>\n<tr>\n<td>Ryuna Nagayama<\/td>\n<td>2021 Special Experiment I<\/td>\n<td>Intracellular diffusion measurement<\/td>\n<\/tr>\n<tr>\n<td>Yuta Shiraishi<\/td>\n<td>2020 Special Experiment II<\/td>\n<td>Diffusion measurement in cell extracts<\/td>\n<\/tr>\n<tr>\n<td>Tomoharu Yoshida<\/td>\n<td>2020 Special Experiment II<\/td>\n<td>Information thermodynamics model of secondary active transport (<a href=\"https:\/\/doi.org\/10.1103\/PhysRevResearch.4.023229?_gl=1*mqcqn1*_ga*MTY5MDUzNzI2My4xNzQxNTExNjQx*_ga_ZS5V2B2DR1*MTc0MTUxMTY0MS4xLjAuMTc0MTUxMTY0MS4wLjAuMTc1NDkwMDM3MA..\">PRR 2022<\/a>)<\/td>\n<\/tr>\n<tr>\n<td>Genki Ishigane<\/td>\n<td>2020 Special Experiment I<\/td>\n<td>(Mainly theoretical studies due to COVID-19 pandemic)<\/td>\n<\/tr>\n<tr>\n<td>Yusuke Shimada<\/td>\n<td>2020 Special Experiment I<\/td>\n<td>(Mainly theoretical studies due to COVID-19 pandemic)<\/td>\n<\/tr>\n<tr>\n<td>Taito Kutsuzawa<\/td>\n<td>2019 Special Experiment II<\/td>\n<td>Manipulation of magnetic beads using magnetic tweezers<\/td>\n<\/tr>\n<tr>\n<td>Ikumi Kobayashi<\/td>\n<td>2019 Special Experiment II<\/td>\n<td>Manipulation of magnetic beads using magnetic tweezers<\/td>\n<\/tr>\n<tr>\n<td>Yugo Inuzuka<\/td>\n<td>2019 Special Experiment I<\/td>\n<td>Non-equilibrium fluctuation measurements in cell membranes<\/td>\n<\/tr>\n<tr>\n<td>Kohei Yoshimura<\/td>\n<td>2019 Special Experiment I<\/td>\n<td>Non-equilibrium fluctuation measurements in cell membranes<\/td>\n<\/tr>\n<tr>\n<td>Tsuneo Uchida<\/td>\n<td>2018 Special Experiment I<\/td>\n<td>Development of ring-TIRF microscope and single-molecule observation of kinesin<\/td>\n<\/tr>\n<tr>\n<td>Yohei Zushi<\/td>\n<td>2018 Special Experiment I<\/td>\n<td>Development of ring-TIRF microscope and single-molecule observation of kinesin<\/td>\n<\/tr>\n<tr>\n<td>Taisuke Matsuda<\/td>\n<td>2017 Special Experiment II<\/td>\n<td>Evaluation of fluctuations in vesicular transport measurements<\/td>\n<\/tr>\n<tr>\n<td>Takuya Shimazaki<\/td>\n<td>2017 Special Experiment II<\/td>\n<td>Mathematical simulation of synaptic plasticity<\/td>\n<\/tr>\n<tr>\n<td>Hidekazu Shirai<\/td>\n<td>2017 Special Experiment I<\/td>\n<td>Development of total internal reflection microscope and single-molecule observation of F1-ATPase<\/td>\n<\/tr>\n<tr>\n<td>Reiko Ammon<\/td>\n<td>2017 Special Experiment I<\/td>\n<td>Development of total internal reflection microscope and single-molecule observation of F1-ATPase<\/td>\n<\/tr>\n<tr>\n<td>Hiroaki Takaaraka<\/td>\n<td>2016 Special Experiment II<\/td>\n<td>Development and implementation of super-resolution microscopy<\/td>\n<\/tr>\n<tr>\n<td>Kenichiro Kamei<\/td>\n<td>2016 Special Experiment II<\/td>\n<td>Development and implementation of super-resolution microscopy<\/td>\n<\/tr>\n<tr>\n<td>Kohei Yamaguchi<\/td>\n<td>2021 University-wide Seminar (S Semester)<\/td>\n<td>Ghost imaging microscopy<\/td>\n<\/tr>\n<tr>\n<td>Takaaki Okochi<\/td>\n<td>2021 University-wide Seminar (S Semester)<\/td>\n<td>Ghost imaging microscopy<\/td>\n<\/tr>\n<tr>\n<td>Nao Sumi<\/td>\n<td>2020 University-wide Seminar (A Semester)<\/td>\n<td>Extraction and measurement of African clawed frog egg cytoplasm<\/td>\n<\/tr>\n<tr>\n<td>Rintaro Shimojo<\/td>\n<td>2020 University-wide Seminar (A Semester)<\/td>\n<td>Development of quantitative phase contrast microscopy<\/td>\n<\/tr>\n<tr>\n<td>Ryotaro Hayashi<\/td>\n<td>2019 University-wide Seminar (A Semester)<\/td>\n<td>Observing liquid-liquid phase separation<\/td>\n<\/tr>\n<tr>\n<td>Naohiro Yamaguchi<\/td>\n<td>2018 University-wide Seminar (S Semester)<\/td>\n<td>Observation of living cells using confocal laser microscopy<\/td>\n<\/tr>\n<tr>\n<td>Hironobu Yoshida<\/td>\n<td>2017 University-wide Seminar (A Semester)<\/td>\n<td>Handmade total internal reflection microscope<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n","protected":false},"excerpt":{"rendered":"<p>Former Undergraduate Students (University of Tokyo &#8211; Special Experiments) Name Academic Year Research Topic Kota Tokiwa 2024 Special Experiment II Estimation of entropy production in cell dynamics Haruo Saito 2024 Special Experiment II Estimation of entropy production using thermodynamic uncertainty relation Hiroya Ezaki 2024 Special Experiment I Development of iSCAT microscope and total internal reflection [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_locale":"en_US","_original_post":"https:\/\/www.okada-lab.phys.s.u-tokyo.ac.jp\/?page_id=814","_lightning_design_setting":{"layout":"default"},"footnotes":""},"class_list":["post-816","page","type-page","status-publish","hentry","en-US"],"jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/www.okada-lab.phys.s.u-tokyo.ac.jp\/index.php\/wp-json\/wp\/v2\/pages\/816","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.okada-lab.phys.s.u-tokyo.ac.jp\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.okada-lab.phys.s.u-tokyo.ac.jp\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.okada-lab.phys.s.u-tokyo.ac.jp\/index.php\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.okada-lab.phys.s.u-tokyo.ac.jp\/index.php\/wp-json\/wp\/v2\/comments?post=816"}],"version-history":[{"count":1,"href":"https:\/\/www.okada-lab.phys.s.u-tokyo.ac.jp\/index.php\/wp-json\/wp\/v2\/pages\/816\/revisions"}],"predecessor-version":[{"id":817,"href":"https:\/\/www.okada-lab.phys.s.u-tokyo.ac.jp\/index.php\/wp-json\/wp\/v2\/pages\/816\/revisions\/817"}],"wp:attachment":[{"href":"https:\/\/www.okada-lab.phys.s.u-tokyo.ac.jp\/index.php\/wp-json\/wp\/v2\/media?parent=816"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}